report_saved_raw_datacontaining arrays of data would break the parser [#7]
report_general_stats_datacontaining arrays of data would break the parser [#7]
plotsvector is not provided but
sections = "plot"[#5]
plot_optskey from the
load_multiqcfunction. Instead, the plots are returned as list columns with nested data frames inside the returned data frame. Users are then able to parse out summary statistics using normal
tidyrfunctions. Refer to the vignette for examples. Also, instead of selecting plots using the names of this argument, they are selected using the new
plotsoption (documented below) [#1].
sectionsargument. This ensures consistency with the data frame column names for plots, which are “plot.XX”.
metadata.sample_idis now always the first column in the data frame, even if you have provided a metadata function.
list_plots()utility function for listing the available plots [#2].
load_multiqcwhich allows for custom parsers for diverse plot types in MultiQC.
load_multiqc, which is a vector of plot identifiers to parse.