NEWS.md
multiqc_data.json file with report_saved_raw_data containing arrays of data would break the parser [#7]multiqc_data.json file with report_general_stats_data containing arrays of data would break the parser [#7]plots vector is not provided but sections = "plot" [#5]plot_opts key from the load_multiqc function. Instead, the plots are returned as list columns with nested data frames inside the returned data frame. Users are then able to parse out summary statistics using normal dplyr and tidyr functions. Refer to the vignette for examples. Also, instead of selecting plots using the names of this argument, they are selected using the new plots option (documented below) [#1].sections argument. This ensures consistency with the data frame column names for plots, which are “plot.XX”.metadata.sample_id is now always the first column in the data frame, even if you have provided a metadata function.list_plots() utility function for listing the available plots [#2].plot_parsers argument to load_multiqc which allows for custom parsers for diverse plot types in MultiQC.plots argument to load_multiqc, which is a vector of plot identifiers to parse.